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  5. AMTR_s00111p00031560

AMTR_s00111p00031560


Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Alc chromatin remodeling factor


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00111p00031560

Target Alias Description ECC score Gene Family Method Actions
Ala_g28495 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29249 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Aop_g06161 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37378.t1 CHR17, Aspi01Gene37378 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000989.25 PKR1, CHR4 CHD3-type chromatin-remodeling factor CHR7... 0.01 OrthoFinder output from all 47 species
Dac_g06996 CHR11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g08480.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Len_g50266 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_102992g0010 CHR17 Probable chromatin-remodeling complex ATPase chain... 0.03 OrthoFinder output from all 47 species
MA_104034g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
MA_8990972g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Ppi_g15409 CHR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g085390.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
Spa_g21765 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Tin_g31900 CHR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011541_P001 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 406 496
IPR000330 SNF2_N 1 353
No external refs found!