AMTR_s00130p00080480 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00130.37

Description : Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.large subunit proteome.mtRPL1 component

Gene families : OG0002232 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002232_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00130p00080480
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
AT2G42710	No alias	Ribosomal protein L1p/L10e family	0.02	OrthoFinder output from all 47 species
Aspi01Gene55149.t1	Aspi01Gene55149	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g25894	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.35G025200.1	Ceric.35G025200	component *(uL1m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g01381	No alias	component *(uL1m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
LOC_Os06g35470.1	LOC_Os06g35470	component mtRPL1 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Len_g24587	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g19309	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
MA_10112138g0010	No alias	50S ribosomal protein L1, chloroplastic OS=Spinacia...	0.06	OrthoFinder output from all 47 species
Pnu_g27467	No alias	component *(uL1m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019423	No alias	component *(uL1m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g13571	No alias	component *(uL1m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc12g013990.3.1	Solyc12g013990	component mtRPL1 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Zm00001e037138_P001	Zm00001e037138	component mtRPL1 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0003937	IMP cyclohydrolase activity	IEP	HCCA
MF	GO:0004358	glutamate N-acetyltransferase activity	IEP	HCCA
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006525	arginine metabolic process	IEP	HCCA
BP	GO:0006526	arginine biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019238	cyclohydrolase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002143	Ribosomal_L1	264	461

External Links

No external refs found!

AMTR_s00130p00080480 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation