1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00135p00026790

AMTR_s00135p00026790 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00135.5

No description available


Gene families : OG0000063 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000063_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00135p00026790
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00239880 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT3G03270 No alias Adenine nucleotide alpha hydrolases-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G62550 No alias Adenine nucleotide alpha hydrolases-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g023029 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g25422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40416 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g08413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37521.t1 Aspi01Gene37521 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05574 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g09430 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g27633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g41608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.13G093900.1 Ceric.13G093900 not classified & original description: pacid=50635779... 0.04 OrthoFinder output from all 47 species
Ceric.28G005600.1 Ceric.28G005600 not classified & original description: pacid=50569579... 0.06 OrthoFinder output from all 47 species
Dcu_g05991 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g23531 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g11239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02091 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_20329 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g19820.3 LOC_Os01g19820 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g19270.1 LOC_Os03g19270 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g47620.1 LOC_Os07g47620 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g06554 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g09505 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g11173 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_100052g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10426703g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10437265g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_14234g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_7063g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g02950.1 No alias Universal stress protein PHOS32 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g28920 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44939 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g37342 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19264 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g26915 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g00393 RD2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000709 No alias not classified & original description: CDS=1-528 0.02 OrthoFinder output from all 47 species
Sam_g06182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g20139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g20155 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g079410.2.1 Solyc02g079410 Universal stress protein PHOS32 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g24838 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g24049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e016001_P001 Zm00001e016001 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e027691_P001 Zm00001e027691 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006950 response to stress IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006016 UspA 8 157
No external refs found!