1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00136p00108810

AMTR_s00136p00108810 (BGAL1,...)


Aliases : BGAL1, evm_27.TU.AmTr_v1.0_scaffold00136.60

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000377 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000377_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00136p00108810
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00054p00149030 BGAL6, MUM2,... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
AT1G45130 BGAL5 beta-galactosidase 5 0.03 OrthoFinder output from all 47 species
AT2G28470 BGAL8 beta-galactosidase 8 0.03 OrthoFinder output from all 47 species
AT4G26140 BGAL12 beta-galactosidase 12 0.04 OrthoFinder output from all 47 species
Adi_g018531 BGAL8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021150 BGAL1 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13644 BGAL8 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27601 BGAL8 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07655 BGAL1 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16024.t1 BGAL1, Aspi01Gene16024 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28360.t1 BGAL8, Aspi01Gene28360 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035970 BGAL8 EC_3.2 glycosylase & original description: CDS=528-3152 0.04 OrthoFinder output from all 47 species
Azfi_s0174.g055941 BGAL8 EC_3.2 glycosylase & original description: CDS=223-2676 0.02 OrthoFinder output from all 47 species
Dac_g09601 BGAL8 EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g44528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00938 BGAL9 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24827 BGAL8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27419 BGAL8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01006709001 BGAL8 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01008835001 BGAL16 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01015038001 BGAL7 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01018853001 BGAL3 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01024031001 BGAL13 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 OrthoFinder output from all 47 species
GSVIVT01033736001 BGAL7 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.01 OrthoFinder output from all 47 species
Gb_12091 BGAL1 beta-galactosidase (BGAL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g37560.1 BGAL1, LOC_Os06g37560 beta-galactosidase (BGAL) 0.06 OrthoFinder output from all 47 species
LOC_Os10g19960.1 BGAL7, LOC_Os10g19960 beta-galactosidase (BGAL) 0.05 OrthoFinder output from all 47 species
Len_g09086 BGAL1 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g37627 BGAL1 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15821 BGAL8 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427427g0010 BGAL1 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
MA_10436863g0010 BGAL10 Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_14774g0010 BGAL8 beta-galactosidase (BGAL) 0.06 OrthoFinder output from all 47 species
MA_168609g0010 BGAL12 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
MA_207283g0010 BGAL8 Beta-galactosidase 8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_329922g0010 BGAL8 beta-galactosidase (BGAL) 0.05 OrthoFinder output from all 47 species
MA_55965g0010 BGAL8 beta-galactosidase (BGAL) 0.06 OrthoFinder output from all 47 species
MA_665188g0010 BGAL8 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Msp_g24966 BGAL1 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04951 BGAL1 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30000 BGAL8 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35159 BGAL8 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18447 BGAL8 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39086 BGAL1 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011417 BGAL1 EC_3.2 glycosylase & original description: CDS=435-2606 0.02 OrthoFinder output from all 47 species
Sam_g19244 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g110000.3.1 BGAL3, Solyc01g110000 beta-galactosidase (BGAL) 0.02 OrthoFinder output from all 47 species
Solyc02g084720.3.1 BGAL3, Solyc02g084720 beta-galactosidase (BGAL) 0.04 OrthoFinder output from all 47 species
Solyc06g062580.3.1 BGAL1, Solyc06g062580 beta-galactosidase (BGAL) 0.02 OrthoFinder output from all 47 species
Solyc07g038120.1.1 BGAL1, Solyc07g038120 Beta-galactosidase OS=Malus domestica... 0.02 OrthoFinder output from all 47 species
Solyc07g042220.2.1 BGAL15, Solyc07g042220 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Solyc11g018490.3.1 BGAL16, Solyc11g018490 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Spa_g55126 BGAL9 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e018433_P002 BGAL9, Zm00001e018433 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Zm00001e019757_P001 BGAL15, Zm00001e019757 beta-galactosidase (BGAL) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001944 Glycoside_Hdrlase_35 4 254
IPR000922 Lectin_gal-bd_dom 677 754
No external refs found!