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  5. AMTR_s00137p00087340

AMTR_s00137p00087340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00137.41

Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0001073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00137p00087340

Target Alias Description ECC score Gene Family Method Actions
AT5G67420 LBD37, ASL39 LOB domain-containing protein 37 0.03 OrthoFinder output from all 47 species
Adi_g041713 LBD37, ASL39 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108649 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11822 LBD38 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0049.g030772 LBD38 AS2/LOB-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.06G068800.1 LBD37, ASL39,... AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G070700.1 LBD38, Ceric.08G070700 AS2/LOB-type transcription factor & original... 0.08 OrthoFinder output from all 47 species
Dcu_g04739 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011896001 LBD42 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01031035001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 OrthoFinder output from all 47 species
LOC_Os01g03890.1 LBD41, LOC_Os01g03890 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os01g20800.1 LOC_Os01g20800 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g32770.1 LBD41, LOC_Os01g32770 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_19934g0010 LBD40 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_223267g0010 LBD40 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_70989g0010 LBD40 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
MA_80122g0010 LBD42 transcription factor (AS2/LOB) 0.07 OrthoFinder output from all 47 species
Solyc04g077990.3.1 LBD38, Solyc04g077990 transcription factor (AS2/LOB) 0.07 OrthoFinder output from all 47 species
Tin_g07389 LBD38 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001981_P001 LBD41, Zm00001e001981 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Zm00001e005129_P001 LBD37, ASL39,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e027415_P001 LBD41, Zm00001e027415 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e032150_P001 LBD41, Zm00001e032150 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 2 103
No external refs found!