AMTR_s00148p00098440 (ATCRY2, CRY2, PHH1,...)

Aliases : ATCRY2, CRY2, PHH1, AT-PHH1, FHA, evm_27.TU.AmTr_v1.0_scaffold00148.69

Description : External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CRY cryptochrome photoreceptor

Gene families : OG0000814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00148p00098440

Target	Alias	Description	ECC score	Gene Family Method
AT4G08920	HY4, ATCRY1,...	cryptochrome 1	0.03	OrthoFinder output from all 47 species
Aspi01Gene40468.t1	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.23G012400.1	HY4, ATCRY1,...	cryptochrome photoreceptor *(CRY) & original...	0.03	OrthoFinder output from all 47 species
MA_10428291g0010	HY4, ATCRY1,...	cryptochrome photoreceptor (CRY)	0.03	OrthoFinder output from all 47 species
MA_10431129g0010	HY4, ATCRY1,...	cryptochrome photoreceptor (CRY)	0.02	OrthoFinder output from all 47 species
MA_112687g0010	ATCRY2, CRY2,...	Pentatricopeptide repeat-containing protein At1g62670,...	0.03	OrthoFinder output from all 47 species
MA_164518g0010	ATCRY2, CRY2,...	Pentatricopeptide repeat-containing protein At1g62670,...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003913	DNA photolyase activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006050	DNA_photolyase_N	7	160
IPR005101	Cryptochr/Photolyase_FAD-bd	210	481

External Links

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AMTR_s00148p00098440 (ATCRY2, CRY2, PHH1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation