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  5. AMTR_s00154p00024620

AMTR_s00154p00024620 (GR-RBP3,...)


Aliases : GR-RBP3, evm_27.TU.AmTr_v1.0_scaffold00154.7

Description : RNA processing.organelle machineries.RNA editing.ORRM-type RNA editing factor


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00154p00024620
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00198740 CCR2, ATGRP7,... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.01 OrthoFinder output from all 47 species
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 OrthoFinder output from all 47 species
AT5G04280 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 OrthoFinder output from all 47 species
Azfi_s0232.g059291 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=1-585 0.03 OrthoFinder output from all 47 species
Ceric.09G002500.1 Ceric.09G002500 RNA chaperone *(RZ1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G044500.1 Ceric.30G044500 RNA chaperone *(RZ1) & original description:... 0.03 OrthoFinder output from all 47 species
Cre17.g729150 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g24341 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
LOC_Os07g08960.1 LOC_Os07g08960 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Len_g30141 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44021 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c7_3360V3.1 CCR1, GR-RBP8,... cold, circadian rhythm, and RNA binding 1 0.01 OrthoFinder output from all 47 species
Sam_g48373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Solyc03g071560.4.1 Solyc03g071560 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Solyc11g008210.3.1 Solyc11g008210 Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g12557 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005260_P002 Zm00001e005260 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Zm00001e033010_P001 Zm00001e033010 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 38 107
No external refs found!