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  5. AMTR_s00154p00072430

AMTR_s00154p00072430 (TCP13, TFPD, PTF1,...)


Aliases : TCP13, TFPD, PTF1, evm_27.TU.AmTr_v1.0_scaffold00154.48

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00154p00072430
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Aev_g07745 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g18510 ATTCP24, TCP24 TCP-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g18903 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23927 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30415 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18877 TCP4, MEE35 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07553 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30172 ATTCP24, TCP24 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02925.t1 TCP3, Aspi01Gene02925 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27741.t1 TCP2, Aspi01Gene27741 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50266.t1 TCP2, Aspi01Gene50266 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0168.g054602 TCP3 TCP-type transcription factor & original description: CDS=18-1559 0.04 OrthoFinder output from all 47 species
Cba_g22010 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g37950 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67028 TCP5 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G003200.1 TCP3, Ceric.01G003200 TCP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11506 ATTCP24, TCP24 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07031 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13231 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07001 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008109001 TCP5 RNA biosynthesis.transcriptional activation.TCP... 0.06 OrthoFinder output from all 47 species
GSVIVT01008234001 TCP12, BRC2 RNA biosynthesis.transcriptional activation.TCP... 0.08 OrthoFinder output from all 47 species
Gb_17863 TCP3 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Gb_30049 TCP2 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Gb_35810 TCP2 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Gb_38376 TCP2 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Gb_38379 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g55750.1 TCP5, LOC_Os01g55750 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os03g57190.1 ATTCP24, TCP24,... transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
LOC_Os05g43760.1 TCP5, LOC_Os05g43760 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os07g05720.1 TCP2, LOC_Os07g05720 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os12g42190.1 ATTCP24, TCP24,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Len_g03300 TCP2 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_101752g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_101752g0020 ATTCP24, TCP24 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
MA_1379g0010 TCP3 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
MA_52440g0010 TCP4, MEE35 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
MA_78665g0010 TCP2 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
MA_86651g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g19590.1 TCP3 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Msp_g48155 TCP3 TCP-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06259 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05160 TCP3 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33965 TCP10 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37628 TCP4, MEE35 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41668 TCP4, MEE35 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20245 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26727 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18726 ATTCP24, TCP24 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo89227 TCP2 RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Solyc02g077250.2.1 TCP4, MEE35,... transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Solyc02g089830.2.1 TCP1, Solyc02g089830 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc03g045030.2.1 TCP12, BRC2,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Solyc03g115010.3.1 TCP5, Solyc03g115010 transcription factor (TCP) 0.06 OrthoFinder output from all 47 species
Solyc04g006980.1.1 TCP12, BRC2,... transcription factor (TCP) 0.06 OrthoFinder output from all 47 species
Solyc05g009900.3.1 TCP12, BRC2,... transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Solyc05g012840.1.1 TCP4, MEE35,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc06g069240.2.1 TCP12, BRC2,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Solyc06g069460.3.1 TCP5, Solyc06g069460 transcription factor (TCP) 0.08 OrthoFinder output from all 47 species
Solyc10g008780.1.1 TCP10, Solyc10g008780 transcription factor (TCP) 0.08 OrthoFinder output from all 47 species
Zm00001e005909_P001 TCP2, Zm00001e005909 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e011911_P001 ATTCP24, TCP24,... transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Zm00001e027401_P002 TCP5, Zm00001e027401 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e032821_P001 TCP2, Zm00001e032821 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 49 129
No external refs found!