AMTR_s00160p00053540 (DOF4.7,...)

Aliases : DOF4.7, evm_27.TU.AmTr_v1.0_scaffold00160.11

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00160p00053540

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	TMO6,...	RNA biosynthesis.transcriptional activation.C2C2...	0.01	OrthoFinder output from all 47 species
AMTR_s00010p00264070	CDF3,...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
AT1G21340	No alias	Dof-type zinc finger DNA-binding family protein	0.02	OrthoFinder output from all 47 species
AT1G51700	ADOF1, DOF1	DOF zinc finger protein 1	0.06	OrthoFinder output from all 47 species
Als_g04849	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011138001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
GSVIVT01016538001	OBP3	RNA biosynthesis.transcriptional activation.C2C2...	0.01	OrthoFinder output from all 47 species
LOC_Os08g38220.1	LOC_Os08g38220	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Ppi_g32547	CDF3	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Smo29617	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.01	OrthoFinder output from all 47 species
Smo89924	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.01	OrthoFinder output from all 47 species
Solyc02g078620.1.1	ADOF2, DOF2,...	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Solyc03g112930.3.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.01	OrthoFinder output from all 47 species
Solyc03g121400.1.1	ADOF2, DOF2,...	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Solyc08g082910.2.1	Solyc08g082910	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Spa_g02206	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	32	87

External Links

No external refs found!

AMTR_s00160p00053540 (DOF4.7,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation