Aliases : ATRBP31, CP31, ATRBP33, RBP31, evm_27.TU.AmTr_v1.0_scaffold00166.36
Description : RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor
Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G35410 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G37220 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.07 | OrthoFinder output from all 47 species | |
| AT3G52150 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT3G52380 | PDE322, CP33 | chloroplast RNA-binding protein 33 | 0.04 | OrthoFinder output from all 47 species | |
| AT4G24770 | ATRBP31, CP31,... | 31-kDa RNA binding protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g053286 | CP31B | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g00606 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g10264 | ATRBP31, CP31,... | plastidial ribonucleoprotein *(CP33a) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Ala_g12603 | ATRBP31, CP31,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g39448 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g10701 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g05873 | ATRBP31, CP31,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g07067 | ATRBP31, CP31,... | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Aop_g07142 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g14081 | ATRBP31, CP31,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene12453.t1 | Aspi01Gene12453 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0007.g010976 | No alias | not classified & original description: CDS=261-1286 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0017.g014465 | ATRBP31, CP31,... | not classified & original description: CDS=173-1078 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0037.g026033 | No alias | not classified & original description: CDS=1-825 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0159.g053948 | ATRBP31, CP31,... | not classified & original description: CDS=143-1057 | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.11G096500.1 | ATRBP31, CP31,... | not classified & original description: pacid=50595915... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.20G084200.1 | ATRBP31, CP31,... | not classified & original description: pacid=50566499... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.38G067800.1 | ATRBP31, CP31,... | not classified & original description: pacid=50580282... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g21785 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g01274 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g02644 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g00421 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g05650 | ATRBP31, CP31,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g10561 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01007596001 | CP31B | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01013146001 | No alias | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025697001 | No alias | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01027917001 | No alias | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01032039001 | No alias | Protein biosynthesis.organelle translation... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_05747 | PDE322, CP33 | component psPSRP2 of small ribosomal subunit proteome | 0.05 | OrthoFinder output from all 47 species | |
| Gb_28108 | CP31B | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_32176 | No alias | component psPSRP2 of small ribosomal subunit proteome | 0.06 | OrthoFinder output from all 47 species | |
| Gb_33449 | No alias | component psPSRP2 of small ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g25960.1 | LOC_Os03g25960 | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g06450.1 | PDE322, CP33,... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os07g43810.1 | LOC_Os07g43810 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g10760.1 | LOC_Os09g10760 | component psPSRP2 of small ribosomal subunit proteome | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os09g39180.1 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.05 | OrthoFinder output from all 47 species | |
| Len_g16035 | CP31B | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10434075g0010 | CP31B | component psPSRP2 of small ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species | |
| MA_136464g0010 | ATRBP31, CP31,... | 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species | |
| MA_474396g0010 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.05 | OrthoFinder output from all 47 species | |
| MA_482994g0010 | CP31B | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species | |
| MA_65183g0010 | No alias | component psPSRP2 of small ribosomal subunit proteome | 0.08 | OrthoFinder output from all 47 species | |
| Mp2g13800.1 | No alias | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.05 | OrthoFinder output from all 47 species | |
| Mp3g24820.1 | CP31B | RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Mp8g03420.1 | No alias | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g04850 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g02906 | ATRBP31, CP31,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g03561 | CP31B | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g06962 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g11334 | CP31B | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19962 | CP31B | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g19963 | ATRBP31, CP31,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g27196 | ATRBP31, CP31,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g02206 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g06203 | No alias | plastidial ribonucleoprotein *(CP33a) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Pnu_g33947 | No alias | plastidial ribonucleoprotein *(CP33a) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Pp3c12_9890V3.1 | Pp3c12_9890 | chloroplast RNA-binding protein 29 | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g02835 | ATRBP31, CP31,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g18180 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0122.g021464 | CP31B | not classified & original description: CDS=19-840 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g006940.4.1 | PDE322, CP33,... | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g111840.3.1 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.06 | OrthoFinder output from all 47 species | |
| Solyc04g074750.3.1 | Solyc04g074750 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc08g076840.3.1 | Solyc08g076840 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc09g007850.3.1 | Solyc09g007850 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc09g090960.4.1 | Solyc09g090960 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc10g086150.2.1 | Solyc10g086150 | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g07687 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g08465 | ATRBP31, CP31,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g05046 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e003947_P001 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e007101_P002 | Zm00001e007101 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e010844_P001 | Zm00001e010844 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e016211_P001 | Zm00001e016211 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e022086_P002 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e032835_P001 | PDE322, CP33,... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e033465_P001 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e035630_P001 | Zm00001e035630 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | HCCA |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0006787 | porphyrin-containing compound catabolic process | IEP | HCCA |
| MF | GO:0008171 | O-methyltransferase activity | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0015994 | chlorophyll metabolic process | IEP | HCCA |
| BP | GO:0015995 | chlorophyll biosynthetic process | IEP | HCCA |
| BP | GO:0015996 | chlorophyll catabolic process | IEP | HCCA |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| BP | GO:0033015 | tetrapyrrole catabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0042440 | pigment metabolic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046148 | pigment biosynthetic process | IEP | HCCA |
| BP | GO:0046149 | pigment catabolic process | IEP | HCCA |
| MF | GO:0046406 | magnesium protoporphyrin IX methyltransferase activity | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| MF | GO:0047746 | chlorophyllase activity | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| No external refs found! |
