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  5. AMTR_s00170p00024360

AMTR_s00170p00024360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00170.6

No description available


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00170p00024360

Target Alias Description ECC score Gene Family Method Actions
AT5G18760 No alias RING/U-box superfamily protein 0.07 OrthoFinder output from all 47 species
Als_g33633 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g025874 No alias E3 ubiquitin ligase & original description: CDS=290-1723 0.04 OrthoFinder output from all 47 species
Ceric.16G080400.1 Ceric.16G080400 not classified & original description: pacid=50588988... 0.03 OrthoFinder output from all 47 species
LOC_Os02g06920.2 LOC_Os02g06920 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Len_g27849 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05462 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g055215.1.1 Solyc07g055215 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e014864_P002 Zm00001e014864 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e040499_P001 Zm00001e040499 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 188 238
No external refs found!