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  5. AMTR_s00175p00021990

AMTR_s00175p00021990 (ATHDA15, HDA15,...)


Aliases : ATHDA15, HDA15, evm_27.TU.AmTr_v1.0_scaffold00175.2

Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase


Gene families : OG0001559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00175p00021990

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0242.g059804 ATHDA5, HDA05, HDA5 class-II histone deacetylase & original description: CDS=132-2222 0.03 OrthoFinder output from all 47 species
Tin_g06072 ATHDA5, HDA05, HDA5 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032874_P003 ATHDA15, HDA15,... class-II histone deacetylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 255 548
No external refs found!