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  5. AMTR_s00182p00048530

AMTR_s00182p00048530 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00182.28

No description available


Gene families : OG0001159 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001159_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00182p00048530
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00081p00168190 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Aev_g09453 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g25387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21741 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g37143 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023260001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_18731 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g07850.1 LOC_Os01g07850 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g45590.1 LOC_Os04g45590 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g10562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426034g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10428538g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_15220g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_179557g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7437g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_9005842g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g03369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005398 No alias not classified & original description: CDS=1-540 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0171.g024374 No alias not classified & original description: CDS=151-678 0.03 OrthoFinder output from all 47 species
Sam_g11779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo439738 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc12g006640.2.1 Solyc12g006640 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g09841 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025870 Glyoxalase-like_dom 28 138
No external refs found!