AMTR_s00209p00023450 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00209.4

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase

Gene families : OG0004431 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004431_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00209p00023450

Target	Alias	Description	ECC score	Gene Family Method
AT4G13780	No alias	methionine--tRNA ligase, putative / methionyl-tRNA...	0.07	OrthoFinder output from all 47 species
Aev_g06133	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
Als_g15472	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
Aob_g02309	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0128.g048806	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
Ceric.08G035400.1	Ceric.08G035400	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020614.25	No alias	Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica	0.01	OrthoFinder output from all 47 species
Cre02.g087950	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
Dcu_g11652	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.03	OrthoFinder output from all 47 species
LOC_Os06g31210.1	LOC_Os06g31210	methionine-tRNA ligase	0.04	OrthoFinder output from all 47 species
Lfl_g29269	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
MA_10436199g0010	No alias	methionine-tRNA ligase	0.05	OrthoFinder output from all 47 species
Mp6g20530.1	No alias	methionine-tRNA ligase	0.02	OrthoFinder output from all 47 species
Ppi_g11161	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
Sam_g27170	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
Smo164891	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
Spa_g12729	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.06	OrthoFinder output from all 47 species
Tin_g12163	No alias	EC_6.1 ligase forming carbon-oxygen bond & original...	0.02	OrthoFinder output from all 47 species
Zm00001e038714_P001	Zm00001e038714	methionine-tRNA ligase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEA	Interproscan
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004832	valine-tRNA ligase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
CC	GO:0005938	cell cortex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0032065	maintenance of protein location in cell cortex	IEP	HCCA
BP	GO:0032507	maintenance of protein location in cell	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033045	regulation of sister chromatid segregation	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0045185	maintenance of protein location	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051651	maintenance of location in cell	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0051983	regulation of chromosome segregation	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002547	tRNA-bd_dom	645	740
IPR015413	Methionyl/Leucyl_tRNA_Synth	20	414

External Links

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AMTR_s00209p00023450 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation