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  5. AMTR_s00316p00012460

AMTR_s00316p00012460 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00316.2

Description : Calcium-binding protein CML42 OS=Arabidopsis thaliana


Gene families : OG0000205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000205_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00316p00012460

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00177420 CML43,... Calcium-binding protein CML42 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AT1G21550 No alias Calcium-binding EF-hand family protein 0.02 OrthoFinder output from all 47 species
Aev_g02133 AGD11 calcium sensor *(CML) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g08071 CML43 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09654 CML42 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11342 AGD11 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g43266 UNE14 calcium sensor *(CML) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g29791 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34644.t1 Aspi01Gene34644 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34645.t1 CML42, Aspi01Gene34645 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34654.t1 CML42, Aspi01Gene34654 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G002500.1 Ceric.16G002500 calcium sensor *(CML) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g29729 CML42 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39086 CML42 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_28443 UNE14 Calmodulin-like protein 2 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os07g48340.1 CML42, LOC_Os07g48340 Probable calcium-binding protein CML24 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Len_g00306 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
MA_393053g0010 CML41 Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_66990g0010 UNE14 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_7799814g0010 CML41 Calcium-binding protein CML42 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_9257733g0010 UNE14 Calcium-binding protein CAST OS=Solanum tuberosum... 0.01 OrthoFinder output from all 47 species
Msp_g15291 CML43 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25033 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013747 UNE14 calcium sensor *(CML) & original description: CDS=1-789 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019014 CML42 calcium sensor *(CML) & original description: CDS=1-651 0.01 OrthoFinder output from all 47 species
Spa_g51233 UNE14 calcium sensor *(CML) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006071 glycerol metabolic process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019400 alditol metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011992 EF-hand-dom_pair 86 147
No external refs found!