AMTR_s00543p00008950 (YCF2.1,...)

Aliases : YCF2.1, evm_27.TU.AmTr_v1.0_scaffold00543.2

Description : Protein Ycf2 OS=Morus indica

Gene families : OG0003470 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003470_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00543p00008950
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00053p00217120	YCF2.1,...	Protein Ycf2 OS=Amborella trichopoda	0.04	OrthoFinder output from all 47 species
ATCG00860	YCF2.1	Chloroplast Ycf2;ATPase, AAA type, core	0.04	OrthoFinder output from all 47 species
ATCG01280	YCF2.2	Chloroplast Ycf2;ATPase, AAA type, core	0.04	OrthoFinder output from all 47 species
Solyc00g500037.1.1	YCF2.1, Solyc00g500037	regulatory component YCF2 of AAA-ATPase motor complex	0.06	OrthoFinder output from all 47 species
Solyc00g500046.1.1	YCF2.1, Solyc00g500046	regulatory component YCF2 of AAA-ATPase motor complex	0.06	OrthoFinder output from all 47 species
Solyc00g500081.1.1	YCF2.1, Solyc00g500081	regulatory component YCF2 of AAA-ATPase motor complex	0.06	OrthoFinder output from all 47 species
Solyc00g500128.1.1	YCF2.1, Solyc00g500128	regulatory component YCF2 of AAA-ATPase motor complex	0.06	OrthoFinder output from all 47 species
Solyc00g500198.1.1	YCF2.1, Solyc00g500198	regulatory component YCF2 of AAA-ATPase motor complex	0.06	OrthoFinder output from all 47 species
Solyc00g500327.1.1	YCF2.1, Solyc00g500327	regulatory component YCF2 of AAA-ATPase motor complex	0.06	OrthoFinder output from all 47 species
Solyc03g020090.1.1	YCF2.1, Solyc03g020090	Protein Ycf2 OS=Daucus carota (sp\|q0g9q1\|ycf2_dauca : 187.0)	0.03	OrthoFinder output from all 47 species
Solyc04g024540.1.1	YCF2.1, Solyc04g024540	regulatory component YCF2 of AAA-ATPase motor complex	0.04	OrthoFinder output from all 47 species
Solyc11g040080.1.1	YCF2.1, Solyc11g040080	Protein Ycf2 A OS=Atropa belladonna...	0.02	OrthoFinder output from all 47 species
Solyc12g036000.1.1	YCF2.1, Solyc12g036000	Protein Ycf2 OS=Solanum tuberosum (sp\|q27ry7\|ycf2_soltu : 189.0)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0009507	chloroplast	IEA	Interproscan
CC	GO:0009536	plastid	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
BP	GO:0008535	respiratory chain complex IV assembly	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
BP	GO:0042773	ATP synthesis coupled electron transport	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	1440	1612
IPR008543	Uncharacterised_Ycf2	1	703
IPR008543	Uncharacterised_Ycf2	704	1290

External Links

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AMTR_s00543p00008950 (YCF2.1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation