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  5. AMTR_s02137p00007130

AMTR_s02137p00007130 (HY4, ATCRY1, BLU1,...)


Aliases : HY4, ATCRY1, BLU1, OOP2, CRY1, evm_27.TU.AmTr_v1.0_scaffold02137.1

Description : External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CRY cryptochrome photoreceptor


Gene families : OG0000814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s02137p00007130
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT4G08920 HY4, ATCRY1,... cryptochrome 1 0.03 OrthoFinder output from all 47 species
Als_g46007 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g01136 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G077400.1 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original... 0.02 OrthoFinder output from all 47 species
Dac_g09706 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009033001 HY4, ATCRY1,... External stimuli response.light.UV-A/blue... 0.04 OrthoFinder output from all 47 species
LOC_Os02g36380.1 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.04 OrthoFinder output from all 47 species
Len_g02360 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10431129g0010 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.02 OrthoFinder output from all 47 species
Pir_g11810 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16571 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g32030 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003913 DNA photolyase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006050 DNA_photolyase_N 20 177
No external refs found!