Aliases : evm_27.TU.AmTr_v1.0_scaffold02809.1
Description : 50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda
Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s02809p00000680 | |
| Cluster | HCCA: Cluster_18 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| ATCG00790 | RPL16 | ribosomal protein L16 | 0.08 | OrthoFinder output from all 47 species | |
| ATMG00080 | RPL16 | ribosomal protein L16 | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g10973 | RPL16 | component *(uL16m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g00855 | RPL16 | component *(uL16m) of large mitoribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.05G042300.1 | RPL16, Ceric.05G042300 | component *(uL16c) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.05G052200.1 | RPL16, Ceric.05G052200 | not classified & original description: pacid=50577977... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.29G004300.1 | RPL16, Ceric.29G004300 | not classified & original description: pacid=50624823... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.35G023300.1 | RPL16, Ceric.35G023300 | not classified & original description: pacid=50581973... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.38G009100.1 | RPL16, Ceric.38G009100 | component *(uL16c) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Cre06.g278224 | No alias | 60S ribosomal protein L16, mitochondrial OS=Prototheca... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_05912 | RPL16 | component mtRPL16 of large ribosomal subunit proteome | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os05g22724.1 | LOC_Os05g22724 | 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g00369 | RPL16 | component *(uL16c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g33347 | No alias | component *(uL16m) of large mitoribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc00g500032.1.1 | RPL16, Solyc00g500032 | 50S ribosomal protein L16, chloroplastic OS=Atropa... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc00g500077.1.1 | RPL16, Solyc00g500077 | 50S ribosomal protein L16, chloroplastic OS=Atropa... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc00g500245.1.1 | Solyc00g500245 | component mtRPL16 of large ribosomal subunit proteome.... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc09g050065.1.1 | RPL16, Solyc09g050065 | 50S ribosomal protein L16, chloroplastic OS=Solanum... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | HCCA |
| MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | HCCA |
| MF | GO:0005215 | transporter activity | IEP | HCCA |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | HCCA |
| MF | GO:0009055 | electron transfer activity | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| BP | GO:0009767 | photosynthetic electron transport chain | IEP | HCCA |
| BP | GO:0009772 | photosynthetic electron transport in photosystem II | IEP | HCCA |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015453 | oxidoreduction-driven active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | HCCA |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | HCCA |
| BP | GO:0019684 | photosynthesis, light reaction | IEP | HCCA |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
| BP | GO:0022900 | electron transport chain | IEP | HCCA |
| BP | GO:0022904 | respiratory electron transport chain | IEP | HCCA |
| BP | GO:0042773 | ATP synthesis coupled electron transport | IEP | HCCA |
| MF | GO:0045156 | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | IEP | HCCA |
| MF | GO:0048038 | quinone binding | IEP | HCCA |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR016180 | Ribosomal_L10e/L16 | 2 | 117 |
| No external refs found! |
