Aev_g08220 (UPF1, ATUPF1, LBA1)

Aliases : UPF1, ATUPF1, LBA1

Description : not classified & original description: none

Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aev_g08220

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055495	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Ala_g33995	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g17076	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.02	OrthoFinder output from all 47 species
Aop_g14327	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Azfi_s0066.g036066	UPF1, ATUPF1, LBA1	not classified & original description: CDS=178-2511	0.02	OrthoFinder output from all 47 species
Ppi_g52670	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Sam_g10497	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc08g007110.4.1	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041677	DNA2/NAM7_AAA_11	350	566
IPR041679	DNA2/NAM7-like_C	576	775

External Links

No external refs found!