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  5. Ppi_g02982

Ppi_g02982


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g02982

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00019p00240430 OSB3,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00083p00015670 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
AT4G32430 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G33990 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G40405 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g033814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075673 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24643 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g42379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18732 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30802 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14838.t1 Aspi01Gene14838 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18163.t1 CRR22, Aspi01Gene18163 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008361 CRR22 not classified & original description: CDS=1-1914 0.04 OrthoFinder output from all 47 species
Azfi_s0005.g009229 No alias not classified & original description: CDS=1-2601 0.02 OrthoFinder output from all 47 species
Azfi_s0032.g024983 No alias not classified & original description: CDS=1-3423 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025724 No alias not classified & original description: CDS=1-3840 0.03 OrthoFinder output from all 47 species
Azfi_s0104.g044765 No alias not classified & original description: CDS=1-2373 0.03 OrthoFinder output from all 47 species
Azfi_s0126.g048644 No alias not classified & original description: CDS=1-2160 0.02 OrthoFinder output from all 47 species
Azfi_s0130.g049076 No alias not classified & original description: CDS=1-1890 0.03 OrthoFinder output from all 47 species
Azfi_s0190.g056908 No alias not classified & original description: CDS=47-3490 0.02 OrthoFinder output from all 47 species
Azfi_s0283.g063049 OTP86 ssDNA-binding protein *(OSB) & original description: CDS=1-2283 0.02 OrthoFinder output from all 47 species
Azfi_s0880.g091024 No alias not classified & original description: CDS=182-3622 0.02 OrthoFinder output from all 47 species
Azfi_s1890.g107856 No alias not classified & original description: CDS=1-3162 0.02 OrthoFinder output from all 47 species
Ceric.16G011900.1 EMB2758, Ceric.16G011900 not classified & original description: pacid=50589297... 0.04 OrthoFinder output from all 47 species
Ceric.21G046800.1 Ceric.21G046800 not classified & original description: pacid=50603820... 0.03 OrthoFinder output from all 47 species
Ceric.24G019600.1 Ceric.24G019600 not classified & original description: pacid=50629269... 0.02 OrthoFinder output from all 47 species
Ceric.29G070800.1 Ceric.29G070800 not classified & original description: pacid=50625555... 0.02 OrthoFinder output from all 47 species
Ceric.39G045800.1 VAC1, ECB2,... not classified & original description: pacid=50583112... 0.02 OrthoFinder output from all 47 species
Dcu_g17102 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03960 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15529 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01031849001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g14450.1 LOC_Os04g14450 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species
Len_g03808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08837 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54328 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g56481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39249 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
MA_785826g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20280 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g29202 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07619 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g23760 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g12099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000158 No alias not classified & original description: CDS=1-2931 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005530 CRR22 not classified & original description: CDS=1-2547 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017029 No alias not classified & original description: CDS=1-2337 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017683 No alias not classified & original description: CDS=1-2736 0.03 OrthoFinder output from all 47 species
Sam_g02929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g05175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09072 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29372 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g33599 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo101239 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Solyc02g082160.2.1 CRR22, Solyc02g082160 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g27468 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g43909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 359 382
IPR002885 Pentatricopeptide_repeat 257 285
IPR002885 Pentatricopeptide_repeat 321 346
IPR002885 Pentatricopeptide_repeat 154 177
IPR002885 Pentatricopeptide_repeat 286 315
IPR002885 Pentatricopeptide_repeat 182 229
IPR002885 Pentatricopeptide_repeat 80 128
No external refs found!