Aliases : ATVPS54, VPS54
Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none
Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Ppi_g03262 | |
| Cluster | HCCA: Cluster_190 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g063596 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g02680 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g05127 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.15G033300.1 | ATVPS54, VPS54,... | GARP-specific component *(VPS54) of GARP/EARP... | 0.06 | OrthoFinder output from all 47 species | |
| Cre02.g087551 | ATVPS54, VPS54 | Vesicle trafficking.target membrane tethering.GARP/EARP... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g12433 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01037972001 | ATVPS54, VPS54 | Vesicle trafficking.target membrane tethering.GARP/EARP... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_03763 | ATVPS54, VPS54 | GARP-specific component VPS54 of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g01396 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.04 | OrthoFinder output from all 47 species | |
| Mp5g09490.1 | ATVPS54, VPS54 | GARP-specific component VPS54 of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g15136 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g01065 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g10508 | No alias | GARP-specific component *(VPS54) of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g030100.4.1 | ATVPS54, VPS54,... | Vacuolar protein sorting-associated protein 54,... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g12359 | ATVPS54, VPS54 | GARP-specific component *(VPS54) of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e008702_P001 | ATVPS54, VPS54,... | GARP-specific component VPS54 of GARP/EARP... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0042147 | retrograde transport, endosome to Golgi | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006605 | protein targeting | IEP | HCCA |
| BP | GO:0006612 | protein targeting to membrane | IEP | HCCA |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | HCCA |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| MF | GO:0008312 | 7S RNA binding | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| CC | GO:0017119 | Golgi transport complex | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
| MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
| BP | GO:0045047 | protein targeting to ER | IEP | HCCA |
| CC | GO:0048500 | signal recognition particle | IEP | HCCA |
| BP | GO:0051668 | localization within membrane | IEP | HCCA |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | HCCA |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | HCCA |
| BP | GO:0072657 | protein localization to membrane | IEP | HCCA |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | HCCA |
| CC | GO:0099023 | vesicle tethering complex | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR012501 | Vps54_C | 878 | 1009 |
| No external refs found! |
