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  5. Ppi_g04573

Ppi_g04573


Description : not classified & original description: none


Gene families : OG0001815 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001815_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g04573
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00130p00053270 FLA20,... No description available 0.02 OrthoFinder output from all 47 species
AT1G15190 No alias Fasciclin-like arabinogalactan family protein 0.02 OrthoFinder output from all 47 species
AT4G29980 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.02 OrthoFinder output from all 47 species
Als_g11362 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G050800.1 Ceric.11G050800 not classified & original description: pacid=50596503... 0.05 OrthoFinder output from all 47 species
Ceric.19G016700.1 Ceric.19G016700 not classified & original description: pacid=50575888... 0.02 OrthoFinder output from all 47 species
Ceric.23G000500.1 Ceric.23G000500 not classified & original description: pacid=50611562... 0.05 OrthoFinder output from all 47 species
Ceric.27G033900.1 Ceric.27G033900 not classified & original description: pacid=50606120... 0.04 OrthoFinder output from all 47 species
Ceric.34G054200.1 Ceric.34G054200 not classified & original description: pacid=50623109... 0.05 OrthoFinder output from all 47 species
Dcu_g42902 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g42961 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g43111 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g50627 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g54179 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54460 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56881 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g59265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g24430 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g39432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g39475 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42728 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43220 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g072680.1.1 Solyc11g072680 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g46225 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g47560 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g49061 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g44448 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Tin_g46034 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000782 FAS1_domain 397 510
No external refs found!