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  5. Ppi_g05020

Ppi_g05020 (RAB1C, ATRAB1C, ATRABD2C)


Aliases : RAB1C, ATRAB1C, ATRABD2C

Description : D-class RAB GTPase & original description: none


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g05020

Target Alias Description ECC score Gene Family Method Actions
Adi_g013330 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g45762 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g55676 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31402 RAB1C, ATRAB1C, ATRABD2C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_37705 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os01g08450.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Mp2g23010.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Mp3g00710.1 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Msp_g10383 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g40698 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g14298 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07909 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003026 ATRAB1A, ATRABD2B, RAB1A not classified & original description: CDS=1-711 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014533 RAB1C, ATRAB1C, ATRABD2C not classified & original description: CDS=274-789 0.03 OrthoFinder output from all 47 species
Sam_g35644 No alias D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Smo228158 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
Spa_g31112 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g34408 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015303_P001 ATRAB1B, RABD2A,... D-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Zm00001e023144_P001 ATRAB1B, RABD2A,... D-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e029693_P001 RAB1C, ATRAB1C,... D-class RAB GTPase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 170
No external refs found!