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  5. Ppi_g05460

Ppi_g05460


Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g05460

Target Alias Description ECC score Gene Family Method Actions
AT1G31340 RUB1, ATRUB1, NEDD8 related to ubiquitin 1 0.02 OrthoFinder output from all 47 species
Ala_g31252 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g08097 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49628 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59298 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32072 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g36739 UBQ4 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18514.t1 UBQ11, Aspi01Gene18514 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20737.t1 UBQ11, Aspi01Gene20737 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29654 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34959 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g43648 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75597 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g79067 UBQ11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36803 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29490 RUB1, ATRUB1, NEDD8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30758 UBQ12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01033876001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Len_g29367 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29368 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36572 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26766 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g27408 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
MA_5869456g0010 UBQ11 Polyubiquitin 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Ore_g23785 RUB1, ATRUB1, NEDD8 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32077 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c4_19000V3.1 UBQ6, Pp3c4_19000 ubiquitin 6 0.02 OrthoFinder output from all 47 species
Ppi_g55284 UBQ4 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014510 UBQ6 not classified & original description: CDS=1-258 0.02 OrthoFinder output from all 47 species
Sam_g26881 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo93613 RUB1, ATRUB1, NEDD8 Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g12172 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 78 127
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!