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  5. Ppi_g05936

Ppi_g05936


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g05936

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
AMTR_s00016p00242080 CRR28,... Pentatricopeptide repeat-containing protein At1g59720,... 0.02 OrthoFinder output from all 47 species
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
Adi_g004298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023734 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12544 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54955 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06971 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02094.t1 Aspi01Gene02094 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07593.t1 ATFTSZ2-1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26812.t1 Aspi01Gene26812 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43278.t1 Aspi01Gene43278 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51655.t1 Aspi01Gene51655 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45714 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67388 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G023200.1 Ceric.30G023200 not classified & original description: pacid=50609019... 0.03 OrthoFinder output from all 47 species
Dac_g09646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14692 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g24393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g24892 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40815 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36053 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
LOC_Os01g41650.1 LOC_Os01g41650 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os03g63260.3 LOC_Os03g63260 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os07g10400.1 CRR22, LOC_Os07g10400 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
LOC_Os09g34870.1 LOC_Os09g34870 Pentatricopeptide repeat-containing protein At2g36980,... 0.02 OrthoFinder output from all 47 species
LOC_Os12g08140.1 LOC_Os12g08140 Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species
Len_g04832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g41529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54495 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54934 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05478 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05976 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_38395g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Msp_g07777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g16922 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g18814 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28772 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28800 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g30589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41121 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02383 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32180 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41649 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g44738 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03774 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16060 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05403 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13010 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19566 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g49155 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63824 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06477 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22205 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57818 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010549 No alias not classified & original description: CDS=364-2607 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013095 No alias not classified & original description: CDS=481-975 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0098.g019493 No alias not classified & original description: CDS=1-3789 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026308 CRR22 ssDNA-binding protein *(OSB) & original description: CDS=95-2287 0.04 OrthoFinder output from all 47 species
Solyc07g053520.2.1 SLO1, Solyc07g053520 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Tin_g05893 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06420 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14007 MEF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17800 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g38392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g41006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 753 781
IPR002885 Pentatricopeptide_repeat 624 645
IPR002885 Pentatricopeptide_repeat 725 748
IPR002885 Pentatricopeptide_repeat 121 143
IPR002885 Pentatricopeptide_repeat 927 947
IPR002885 Pentatricopeptide_repeat 222 244
IPR002885 Pentatricopeptide_repeat 420 446
IPR002885 Pentatricopeptide_repeat 523 545
IPR002885 Pentatricopeptide_repeat 147 193
IPR002885 Pentatricopeptide_repeat 448 494
IPR002885 Pentatricopeptide_repeat 248 295
IPR002885 Pentatricopeptide_repeat 854 897
IPR002885 Pentatricopeptide_repeat 550 595
IPR002885 Pentatricopeptide_repeat 346 394
IPR002885 Pentatricopeptide_repeat 46 93
IPR002885 Pentatricopeptide_repeat 952 999
No external refs found!