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  5. Ppi_g06457

Ppi_g06457


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g06457

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00235510 OTP84,... Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
AT2G36730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g002434 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036507 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g099272 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g27648 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32785 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g38819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30723 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55145 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g23671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33113 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02312.t1 Aspi01Gene02312 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07235.t1 REME1, Aspi01Gene07235 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60948.t1 OTP84, Aspi01Gene60948 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0134.g049413 EMB2758 not classified & original description: CDS=1-390 0.05 OrthoFinder output from all 47 species
Azfi_s0519.g075227 No alias not classified & original description: CDS=1-1455 0.04 OrthoFinder output from all 47 species
Cba_g29455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G023600.1 EMB2758, Ceric.01G023600 not classified & original description: pacid=50592720... 0.05 OrthoFinder output from all 47 species
Ceric.05G087100.1 Ceric.05G087100 not classified & original description: pacid=50579181... 0.04 OrthoFinder output from all 47 species
Ceric.10G043800.1 Ceric.10G043800 not classified & original description: pacid=50613534... 0.04 OrthoFinder output from all 47 species
Ceric.23G032000.1 Ceric.23G032000 not classified & original description: pacid=50611416... 0.04 OrthoFinder output from all 47 species
Ceric.26G001100.1 Ceric.26G001100 not classified & original description: pacid=50598974... 0.05 OrthoFinder output from all 47 species
Ceric.29G048500.1 Ceric.29G048500 not classified & original description: pacid=50625078... 0.04 OrthoFinder output from all 47 species
Dcu_g25879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36991 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g31679 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g37997 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g44055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46522 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.04 OrthoFinder output from all 47 species
LOC_Os03g13230.1 LOC_Os03g13230 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os07g47370.1 LOC_Os07g47370 Pentatricopeptide repeat-containing protein At4g32430,... 0.04 OrthoFinder output from all 47 species
Len_g03910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26951 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g31725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09042 OTP80 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g15182 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_81514g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g28724 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g32055 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g38951 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21816 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g31815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54672 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g15980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Smo431043 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc04g016540.2.1 Solyc04g016540 Pentatricopeptide repeat-containing protein At2g39620... 0.05 OrthoFinder output from all 47 species
Solyc11g006940.3.1 Solyc11g006940 component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Tin_g11897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP HCCA
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0034311 diol metabolic process IEP HCCA
BP GO:0034312 diol biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046146 tetrahydrobiopterin metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 352 372
IPR002885 Pentatricopeptide_repeat 251 276
IPR002885 Pentatricopeptide_repeat 74 96
IPR002885 Pentatricopeptide_repeat 654 679
IPR002885 Pentatricopeptide_repeat 277 323
IPR002885 Pentatricopeptide_repeat 480 527
IPR002885 Pentatricopeptide_repeat 175 222
IPR002885 Pentatricopeptide_repeat 579 626
IPR002885 Pentatricopeptide_repeat 377 424
No external refs found!