Ppi_g08291 (emb1354, CDC48C)

Aliases : emb1354, CDC48C

Description : not classified & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g08291

Target	Alias	Description	ECC score	Gene Family Method
Adi_g054679	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g20068	CIP111	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene27195.t1	emb1354, CDC48C,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene27196.t1	emb1354, CDC48C,...	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g77518	No alias	platform ATPase CDC48 & original description: none	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.11	CDC48A, CDC48, ATCDC48	Cell division control protein 48 homolog A...	0.01	OrthoFinder output from all 47 species
Ehy_g07885	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Len_g22643	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g33871	CIP111	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g20925	CIP111	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19173	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g20230	CIP111	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c7_25950V3.1	CDC48A, CDC48,...	ATPase, AAA-type, CDC48 protein	0.02	OrthoFinder output from all 47 species
Smo89456	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Tin_g19659	CIP111	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e021405_P001	CIP111, Zm00001e021405	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	62	117
IPR003959	ATPase_AAA_core	1	40

External Links

No external refs found!

Ppi_g08291 (emb1354, CDC48C)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation