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  5. Ppi_g13844

Ppi_g13844


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g13844
Cluster HCCA: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
AT2G36980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G19191 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088800 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06657 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06301 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g25768 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26592 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28190 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09035 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37347 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02659 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03841 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01654.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14074.t1 CRR22, Aspi01Gene14074 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023864 No alias not classified & original description: CDS=1-2211 0.03 OrthoFinder output from all 47 species
Azfi_s0059.g034645 No alias not classified & original description: CDS=1-2358 0.03 OrthoFinder output from all 47 species
Azfi_s0087.g042376 No alias not classified & original description: CDS=1-2979 0.03 OrthoFinder output from all 47 species
Azfi_s0108.g045187 No alias not classified & original description: CDS=1-2178 0.03 OrthoFinder output from all 47 species
Azfi_s0251.g060294 No alias not classified & original description: CDS=1-879 0.02 OrthoFinder output from all 47 species
Cba_g13627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75350 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.02 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.14G004700.1 Ceric.14G004700 not classified & original description: pacid=50634585... 0.03 OrthoFinder output from all 47 species
Ceric.33G057300.1 Ceric.33G057300 not classified & original description: pacid=50607177... 0.02 OrthoFinder output from all 47 species
Dcu_g36401 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g35714 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g36369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07979 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g08919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17769 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18559 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g23070 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44429 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47306 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55705 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g59273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07787 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08499 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18616 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40188 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_82569g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Msp_g03562 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g32055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41053 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18275 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g29848 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009070 No alias not classified & original description: CDS=1-2223 0.03 OrthoFinder output from all 47 species
Sam_g24540 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g062820.1.1 Solyc07g062820 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Spa_g01947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g01950 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g14147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g30264 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g33790 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24942 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 729 776
IPR002885 Pentatricopeptide_repeat 321 369
IPR002885 Pentatricopeptide_repeat 221 267
IPR002885 Pentatricopeptide_repeat 423 470
IPR002885 Pentatricopeptide_repeat 803 826
IPR002885 Pentatricopeptide_repeat 504 528
IPR002885 Pentatricopeptide_repeat 703 727
IPR002885 Pentatricopeptide_repeat 122 151
IPR002885 Pentatricopeptide_repeat 195 220
IPR002885 Pentatricopeptide_repeat 602 627
IPR002885 Pentatricopeptide_repeat 630 660
IPR032867 DYW_dom 961 1033
IPR046848 E_motif 846 908
No external refs found!