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  5. Ppi_g18978

Ppi_g18978


Description : not classified & original description: none


Gene families : OG0001367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001367_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g18978

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00128640 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00129060 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00055p00185500 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00067p00091510 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aev_g16127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34497.t1 Aspi01Gene34497 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34562.t1 Aspi01Gene34562 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34564.t1 Aspi01Gene34564 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0182.g056421 No alias not classified & original description: CDS=1-1590 0.02 OrthoFinder output from all 47 species
Azfi_s0334.g065497 No alias not classified & original description: CDS=1-1488 0.05 OrthoFinder output from all 47 species
Ceric.1Z099600.1 Ceric.1Z099600 not classified & original description: pacid=50573463... 0.03 OrthoFinder output from all 47 species
Ceric.1Z099700.1 Ceric.1Z099700 not classified & original description: pacid=50573460... 0.03 OrthoFinder output from all 47 species
Ceric.1Z099800.1 Ceric.1Z099800 not classified & original description: pacid=50573466... 0.03 OrthoFinder output from all 47 species
Ceric.1Z159800.1 Ceric.1Z159800 not classified & original description: pacid=50567680... 0.04 OrthoFinder output from all 47 species
Ceric.1Z159900.1 Ceric.1Z159900 not classified & original description: pacid=50567683... 0.04 OrthoFinder output from all 47 species
Ceric.1Z166900.1 Ceric.1Z166900 not classified & original description: pacid=50632887... 0.04 OrthoFinder output from all 47 species
Ceric.1Z228600.1 Ceric.1Z228600 not classified & original description: pacid=50606299... 0.03 OrthoFinder output from all 47 species
Ceric.1Z240500.1 Ceric.1Z240500 not classified & original description: pacid=50576892... 0.03 OrthoFinder output from all 47 species
Dac_g26357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_35317 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os02g13190.1 LOC_Os02g13190 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os02g13260.1 LOC_Os02g13260 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os02g28590.1 LOC_Os02g28590 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g00910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp5g00950.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp5g00980.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp5g01100.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g36415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g080850.1.1 Solyc02g080850 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g15846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR027949 Chloroplast_duf 47 369
No external refs found!