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  5. Ppi_g24564

Ppi_g24564


Description : component *(eS31) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g24564
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 UBQ6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.03 OrthoFinder output from all 47 species
AT2G47110 UBQ6 ubiquitin 6 0.03 OrthoFinder output from all 47 species
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
AT3G62250 UBQ5 ubiquitin 5 0.02 OrthoFinder output from all 47 species
Ceric.08G035500.1 Ceric.08G035500 component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.21G057400.1 UBQ6, Ceric.21G057400 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre06.g273600 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
GSVIVT01012906001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01022543001 No alias Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum 0.03 OrthoFinder output from all 47 species
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Gb_15027 UBQ6 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
Gb_40288 UBQ6 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Gb_41257 No alias component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os01g22490.1 UBQ6, LOC_Os01g22490 component RPS27a of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os05g06770.1 UBQ6, LOC_Os05g06770 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_529552g0010 UBQ6 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp7g12760.1 UBQ6 component RPS27a of SSU proteome 0.01 OrthoFinder output from all 47 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Msp_g35305 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Msp_g38968 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c10_25270V3.1 Pp3c10_25270 ubiquitin extension protein 1 0.01 OrthoFinder output from all 47 species
Pp3c12_5640V3.1 UBQ6, Pp3c12_5640 ubiquitin 6 0.04 OrthoFinder output from all 47 species
Pp3c12_5760V3.1 UBQ6, Pp3c12_5760 ubiquitin 6 0.05 OrthoFinder output from all 47 species
Pp3c20_23170V3.1 Pp3c20_23170 ubiquitin extension protein 1 0.01 OrthoFinder output from all 47 species
Pp3c4_19000V3.1 UBQ6, Pp3c4_19000 ubiquitin 6 0.03 OrthoFinder output from all 47 species
Smo111605 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc03g082570.4.1 Solyc03g082570 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc08g083120.3.1 Solyc08g083120 component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc12g099025.1.1 UBQ6, Solyc12g099025 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e000962_P001 Zm00001e000962 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e009474_P001 Zm00001e009474 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e026237_P001 UBQ6, Zm00001e026237 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e028916_P001 UBQ6, Zm00001e028916 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 71
IPR002906 Ribosomal_S27a 101 144
No external refs found!