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  5. Ppi_g27714

Ppi_g27714


Description : not classified & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g27714
Cluster HCCA: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
Adi_g119871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g125340 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g56949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19317 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059828 NFD03, HMGB3, NFD3 not classified & original description: CDS=1-552 0.03 OrthoFinder output from all 47 species
Cba_g43569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g34613 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g21071 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Gb_05796 NFD2, HMG BETA... High mobility group B protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g32302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g21545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g23676 NFD2, HMG BETA... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g27361 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30041 NFD2, HMG BETA... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g36927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44824 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g45339 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g49550 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 48 116
No external refs found!