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  5. Ppi_g29284

Ppi_g29284


Description : heavy chain of clathrin triskelion & original description: none


Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g29284

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00168430 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
AT3G11130 No alias Clathrin, heavy chain 0.07 OrthoFinder output from all 47 species
Adi_g011980 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12409 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g02408 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0078.g038251 No alias heavy chain of clathrin triskelion & original... 0.05 OrthoFinder output from all 47 species
Cba_g27949 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27951 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G067200.1 Ceric.06G067200 heavy chain of clathrin triskelion & original... 0.06 OrthoFinder output from all 47 species
Ceric.1Z011000.1 Ceric.1Z011000 heavy chain of clathrin triskelion & original... 0.05 OrthoFinder output from all 47 species
Dcu_g02059 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01024708001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
Gb_33028 No alias heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Gb_33029 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os11g01380.1 LOC_Os11g01380 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
LOC_Os12g01390.1 LOC_Os12g01390 heavy chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Len_g11569 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g03514 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
MA_528g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_641648g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.02 OrthoFinder output from all 47 species
Msp_g26122 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13635 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002555 No alias heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Sam_g11622 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Smo149750 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Solyc03g096000.3.1 Solyc03g096000 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Solyc05g052510.4.1 Solyc05g052510 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Solyc06g051310.3.1 Solyc06g051310 heavy chain of clathrin triskelion 0.07 OrthoFinder output from all 47 species
Spa_g09457 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17793 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009296_P003 Zm00001e009296 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Zm00001e020822_P001 Zm00001e020822 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Zm00001e023940_P002 Zm00001e023940 heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species
Zm00001e039167_P001 Zm00001e039167 heavy chain of clathrin triskelion 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004788 thiamine diphosphokinase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009229 thiamine diphosphate biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042357 thiamine diphosphate metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR022365 Clathrin_H-chain_propeller_rpt 156 197
IPR000547 Clathrin_H-chain/VPS_repeat 1437 1579
IPR000547 Clathrin_H-chain/VPS_repeat 1292 1431
IPR000547 Clathrin_H-chain/VPS_repeat 993 1133
IPR000547 Clathrin_H-chain/VPS_repeat 557 692
IPR000547 Clathrin_H-chain/VPS_repeat 1144 1281
IPR000547 Clathrin_H-chain/VPS_repeat 701 839
IPR000547 Clathrin_H-chain/VPS_repeat 850 975
IPR015348 Clathrin_H-chain_linker_core 344 367
No external refs found!