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  5. Ppi_g32553

Ppi_g32553 (CAB3, AB180, LHCB1.2)


Aliases : CAB3, AB180, LHCB1.2

Description : component *(LHCb1/2/3) of LHC-II complex & original description: none


Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g32553
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00069900 LHCB1.5, LHB1B2,... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AMTR_s00189p00032350 LHCB1.3, CAB140,... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Aev_g13119 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aob_g02850 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g13734 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g16137 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g28499 CAB3, AB180, LHCB1.2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene29501.t1 LHCB2.2, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene50331.t1 LHCB1.5, LHB1B2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.32G021700.1 LHCB1.3, CAB140,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Cre03.g156900 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.01 OrthoFinder output from all 47 species
Cre04.g232104 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.01 OrthoFinder output from all 47 species
Cre06.g284250 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre16.g673650 LHCB5 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dac_g00552 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14033 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dac_g21074 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Dac_g23315 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dac_g29163 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Dac_g29164 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dac_g32133 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g49339 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g29296 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Gb_41161 LHCB3*1, LHCB3 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g41710.1 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g39610.1 LHCB2.2, LHCB2,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g37550.1 LHCB3*1, LHCB3,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
LOC_Os09g17740.1 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
LOC_Os11g13890.1 LHCB5, LOC_Os11g13890 component LHCb5 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Len_g09838 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
MA_176279g0010 LHCB5 component LHCb5 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Mp1g29620.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g06770.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g08940.1 LHCB3*1, LHCB3 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g09180.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Nbi_g30528 CAB3, AB180, LHCB1.2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15308 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06072 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ppi_g32551 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ppi_g62433 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017045 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Solyc06g063370.3.1 LHCB5, Solyc06g063370 component LHCb5 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Solyc08g067320.3.1 LHCB1.5, LHB1B2,... Chlorophyll a-b binding protein 3A, chloroplastic... 0.02 OrthoFinder output from all 47 species
Solyc08g067330.1.1 CAB3, AB180,... Chlorophyll a-b binding protein 16, chloroplastic... 0.02 OrthoFinder output from all 47 species
Solyc12g011450.2.1 LHCB3*1, LHCB3,... component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Zm00001e004940_P001 LHCB2.3, LHCB2,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Zm00001e004941_P001 LHCB2.3, LHCB2,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Zm00001e011045_P002 LHCB5, Zm00001e011045 component LHCb5 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Zm00001e020627_P001 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Zm00001e021290_P001 LHCB5, Zm00001e021290 component LHCb5 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Zm00001e032450_P001 LHCB1.5, LHB1B2,... Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.03 OrthoFinder output from all 47 species
Zm00001e034922_P001 LHCB1.5, LHB1B2,... Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.04 OrthoFinder output from all 47 species
Zm00001e035249_P001 LHCB3*1, LHCB3,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 1 126
No external refs found!