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  5. Aev_g11306

Aev_g11306


Description : component *(uL1c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0002232 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002232_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g11306
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00035950 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
AT3G63490 No alias Ribosomal protein L1p/L10e family 0.03 OrthoFinder output from all 47 species
Adi_g083284 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ala_g13358 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Aob_g31675 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Aop_g11179 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g035757 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.36G042400.1 Ceric.36G042400 component *(uL1c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cre02.g088900 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Dac_g00779 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Dcu_g06155 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dde_g12366 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01032196001 No alias Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
Gb_16169 No alias component psRPL1 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
LOC_Os05g32220.1 LOC_Os05g32220 component psRPL1 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Len_g24587 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Lfl_g03897 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Lfl_g19309 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
MA_10002614g0010 No alias 50S ribosomal protein L1, chloroplastic OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
MA_310797g0010 No alias 50S ribosomal protein L1, chloroplastic OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp1g07500.1 No alias component psRPL1 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Msp_g12689 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Nbi_g11958 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Ore_g28354 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pir_g01275 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ppi_g41124 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023589 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Smo143134 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Spa_g16769 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Tin_g00638 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e031570_P001 Zm00001e031570 component psRPL1 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 147 337
No external refs found!