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  5. Ppi_g38982

Ppi_g38982 (DRD3, ATNRPD1B,...)


Aliases : DRD3, ATNRPD1B, NRPD1B, NRPE1, DMS5

Description : component *(NRPE1) of RNA polymerase V complex & original description: none


Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g38982

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00153410 NRPD1A, POL IVA,... DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Als_g23321 DRD3, ATNRPD1B,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.1Z037800.1 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.06 OrthoFinder output from all 47 species
Dcu_g05836 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dde_g21156 NRPD1A, POL IVA,... component *(NRPE1) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g25284 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
LOC_Os02g05880.1 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002598 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
Solyc01g096390.4.1 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.02 OrthoFinder output from all 47 species
Spa_g21387 NRPD1A, POL IVA,... not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 674 818
IPR007083 RNA_pol_Rpb1_4 877 938
IPR007081 RNA_pol_Rpb1_5 981 1100
IPR000722 RNA_pol_asu 511 670
IPR007080 RNA_pol_Rpb1_1 16 460
No external refs found!