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  5. Ppi_g43041

Ppi_g43041


Description : not classified & original description: none


Gene families : OG0000911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000911_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g43041
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00239970 BBC1, RSU2,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Als_g19346 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020629.36 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dac_g15740 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dac_g26993 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01030767001 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g31949 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g34816 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pir_g04222 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g19558 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g40236 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g05295 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g31672 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e028430_P003 BBC1, RSU2,... component RPL13 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 1 89
No external refs found!