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  5. Aev_g13080

Aev_g13080


Description : helicase UAP56 & original description: none


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g13080

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
AT5G11200 No alias DEAD/DEAH box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Aop_g30475 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035967 No alias helicase UAP56 & original description: CDS=1-1335 0.02 OrthoFinder output from all 47 species
Azfi_s0557.g076900 No alias helicase UAP56 & original description: CDS=1-1608 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.21 No alias DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Dcu_g19847 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11077 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Gb_04230 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Lfl_g13215 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Ore_g07693 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07151 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017678 No alias helicase UAP56 & original description: CDS=11-1291 0.02 OrthoFinder output from all 47 species
Solyc06g066060.3.1 Solyc06g066060 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Spa_g50791 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31414 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027715_P001 Zm00001e027715 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 276 383
IPR011545 DEAD/DEAH_box_helicase_dom 71 236
No external refs found!