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  5. Ppi_g53952

Ppi_g53952


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g53952

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00217860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00176600 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00041p00129840 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
AMTR_s00099p00097640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
Adi_g055247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17019 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54909 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57094 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28159 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40270 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16511 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09925.t1 Aspi01Gene09925 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16353.t1 Aspi01Gene16353 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene21870.t1 EMB2758, Aspi01Gene21870 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34036.t1 CRR22, Aspi01Gene34036 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70790.t1 Aspi01Gene70790 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000167 No alias not classified & original description: CDS=1-1701 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000731 No alias not classified & original description: CDS=1-3192 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011649 No alias not classified & original description: CDS=1-3195 0.04 OrthoFinder output from all 47 species
Azfi_s0009.g011901 No alias not classified & original description: CDS=1-1638 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023878 No alias not classified & original description: CDS=1-2883 0.03 OrthoFinder output from all 47 species
Azfi_s0134.g049386 No alias not classified & original description: CDS=1-2409 0.04 OrthoFinder output from all 47 species
Azfi_s0143.g051490 No alias not classified & original description: CDS=1-2688 0.03 OrthoFinder output from all 47 species
Azfi_s0184.g056534 OTP84 not classified & original description: CDS=1-2040 0.03 OrthoFinder output from all 47 species
Azfi_s0277.g061496 No alias not classified & original description: CDS=1-2121 0.03 OrthoFinder output from all 47 species
Azfi_s0345.g065835 No alias not classified & original description: CDS=1-1926 0.03 OrthoFinder output from all 47 species
Azfi_s0405.g068373 No alias not classified & original description: CDS=1-2967 0.03 OrthoFinder output from all 47 species
Azfi_s0889.g091250 No alias not classified & original description: CDS=1-2652 0.04 OrthoFinder output from all 47 species
Azfi_s0999.g094975 No alias not classified & original description: CDS=29-2698 0.02 OrthoFinder output from all 47 species
Cba_g04726 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06922 MEF19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16998 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19539 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20235 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20760 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G000400.1 Ceric.07G000400 not classified & original description: pacid=50627195... 0.03 OrthoFinder output from all 47 species
Ceric.07G024400.1 Ceric.07G024400 not classified & original description: pacid=50626298... 0.03 OrthoFinder output from all 47 species
Ceric.10G013000.1 EMB2758, Ceric.10G013000 not classified & original description: pacid=50613337... 0.03 OrthoFinder output from all 47 species
Ceric.11G041000.1 Ceric.11G041000 not classified & original description: pacid=50594870... 0.02 OrthoFinder output from all 47 species
Ceric.13G050400.1 Ceric.13G050400 not classified & original description: pacid=50636404... 0.03 OrthoFinder output from all 47 species
Ceric.18G069700.1 CRR2, Ceric.18G069700 not classified & original description: pacid=50622363... 0.02 OrthoFinder output from all 47 species
Ceric.21G062800.1 Ceric.21G062800 not classified & original description: pacid=50603272... 0.03 OrthoFinder output from all 47 species
Ceric.30G071100.1 Ceric.30G071100 not classified & original description: pacid=50608720... 0.02 OrthoFinder output from all 47 species
Dac_g06472 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g07560 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06376 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08927 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10377 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17307 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21328 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21411 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26851 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g31896 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g35843 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g35896 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g35962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38658 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39633 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04001 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04853 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g19684 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23994 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26859 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12128 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01005260001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
GSVIVT01017823001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.04 OrthoFinder output from all 47 species
GSVIVT01023345001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.02 OrthoFinder output from all 47 species
Len_g04352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10511 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15007 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30844 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10164206g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_31170g0010 CRR22 RNA editing factor (MEF19) 0.02 OrthoFinder output from all 47 species
MA_34492g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_50118g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g05274 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17460 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17745 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g19370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31269 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31404 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41129 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g40735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03324 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12503 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63257 RARE1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23595 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g29965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c6_28980V3.1 Pp3c6_28980 organellar single-stranded DNA binding protein 3 0.02 OrthoFinder output from all 47 species
Ppi_g03806 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003098 No alias not classified & original description: CDS=1-2883 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005911 EMB2758 not classified & original description: CDS=1-2163 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008668 No alias not classified & original description: CDS=1-2001 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018986 No alias not classified & original description: CDS=1-1941 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019295 No alias not classified & original description: CDS=1-1539 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023714 No alias not classified & original description: CDS=1-2772 0.02 OrthoFinder output from all 47 species
Sam_g23134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Smo83339 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
Spa_g02212 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56147 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30384 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
Zm00001e041987_P001 Zm00001e041987 Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 76 123
IPR002885 Pentatricopeptide_repeat 178 224
IPR002885 Pentatricopeptide_repeat 50 71
IPR002885 Pentatricopeptide_repeat 356 377
IPR002885 Pentatricopeptide_repeat 253 274
IPR002885 Pentatricopeptide_repeat 152 175
No external refs found!