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  5. Ppi_g61287

Ppi_g61287 (ARA-1, ATRABA5E,...)


Aliases : ARA-1, ATRABA5E, RABA5E, ATRAB11D, ARA

Description : A-class RAB GTPase & original description: none


Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g61287

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00108p00139240 AtRABA1f,... Ras-related protein RABA1f OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G05810 ARA-1, ATRABA5E,... RAB GTPase homolog A5E 0.03 OrthoFinder output from all 47 species
AT1G73640 RABA6a, AtRABA6a RAB GTPase homolog A6A 0.05 OrthoFinder output from all 47 species
AT4G18430 AtRABA1e, RABA1e RAB GTPase homolog A1E 0.02 OrthoFinder output from all 47 species
Ala_g10669 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03446 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22189 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g22467 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g36000 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene00456.t1 AtRABA1f,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60173.t1 AtRABA1f,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene69385.t1 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.32G031600.1 ATRABA5C, ARA4,... A-class RAB GTPase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g27746 ARA-1, ATRABA5E,... A-class RAB GTPase & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g25207 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50243 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03218 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02093 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005281001 AtRABA5b, RABA5b Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
GSVIVT01014250001 AtRABA1f, RABA1f Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
LOC_Os01g54590.1 ATRABA1B, RAB11,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os05g01480.1 ATRABA2A,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os09g15790.1 AtRABA1f,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Len_g02212 AtRABA5d, RABA5d not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g02647 RAB-A2C,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16053 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
MA_18685g0010 AtRABA5d, RABA5d A-class RAB GTPase 0.04 OrthoFinder output from all 47 species
MpVg00760.1 AtRABA1f, RABA1f No annotation 0.02 OrthoFinder output from all 47 species
Msp_g05544 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09974 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04633 RABA2b,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14192 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27361 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g05911 ATRABA2A,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09438 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009470 ATRABA2A,... A-class RAB GTPase & original description: CDS=131-796 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026297 AtRABA1f, RABA1f A-class RAB GTPase & original description: CDS=308-952 0.04 OrthoFinder output from all 47 species
Sam_g08198 No alias A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Smo230012 AtRABA5d, RABA5d Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Solyc03g006270.3.1 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Solyc06g005810.3.1 RAB-A2C,... A-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Spa_g12437 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14805 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003625_P001 ATRABA5C, ARA4,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e006210_P001 RABA2b,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e020213_P001 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e032148_P001 ATRABA1B, RAB11,... A-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Zm00001e033825_P001 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0009922 fatty acid elongase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 21 186
No external refs found!