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  5. Ppi_g62548

Ppi_g62548


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g62548

Target Alias Description ECC score Gene Family Method Actions
AT1G26800 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G55530 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G56580 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G26400 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G53910 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g017038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04416 RHC1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g44017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16608.t1 RHC1A, Aspi01Gene16608 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33056.t1 Aspi01Gene33056 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G037300.1 Ceric.16G037300 not classified & original description: pacid=50589925... 0.04 OrthoFinder output from all 47 species
Dac_g21770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11152 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
LOC_Os03g20870.1 LOC_Os03g20870 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os03g22830.2 RHC1A, LOC_Os03g22830 Probable E3 ubiquitin-protein ligase RHC1A... 0.02 OrthoFinder output from all 47 species
Len_g47682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24820 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_9328282g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012146 No alias not classified & original description: CDS=1-969 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012286 No alias not classified & original description: CDS=1-1674 0.03 OrthoFinder output from all 47 species
Solyc08g075910.1.1 RHC1A, Solyc08g075910 Probable E3 ubiquitin-protein ligase RHC1A... 0.04 OrthoFinder output from all 47 species
Spa_g05316 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Spa_g09981 RHC1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027319_P001 Zm00001e027319 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Zm00001e030803_P001 Zm00001e030803 Probable E3 ubiquitin-protein ligase RHC1A... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 274 316
No external refs found!