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  5. Ppi_g62574

Ppi_g62574 (SHP2, AGL5)


Aliases : SHP2, AGL5

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g62574
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00266470 SOC1, AGL20,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00193200 STK, AGL11,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00198970 XAL1, AGL12,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Aev_g20861 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38807 AGL91 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17818.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17819.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene50728.t1 STK, AGL11,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20775 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g19022 AGL13 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25334 AGL4, SEP2 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_38922 AGL6 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g11330.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os07g04170.1 AP3, ATAP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g08514 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g41375 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g41503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56241 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23025 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_1170g0010 AGL8, FUL no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_8636733g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Ppi_g30733 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114840.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc04g005320.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc10g017640.1.1 GL19, AGL19,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Spa_g15478 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003667_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e030373_P001 AGL10, CAL1,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e031267_P003 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e032487_P001 AGL61, DIA,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 67 114
No external refs found!