Ore_g00644 (PUB12, AtPUB12)

Aliases : PUB12, AtPUB12

Description : E3 ubiquitin ligase *(PUB8) & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g00644

Target	Alias	Description	ECC score	Gene Family Method
Als_g16594	PUB14, ATPUB14	not classified & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01030205001	No alias	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_10627	PUB8, B80	U-box domain-containing protein 13 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Gb_24091	PUB9, ATPUB9	U-box domain-containing protein 14 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_29129	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.02	OrthoFinder output from all 47 species
Gb_29276	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os05g39930.1	LOC_Os05g39930	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10329986g0010	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
MA_129765g0010	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.05	OrthoFinder output from all 47 species
MA_8993116g0010	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Nbi_g14682	ATPUB45, PUB45	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g18678	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30846	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc04g077850.3.1	Solyc04g077850	U-box domain-containing protein 4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc06g076040.3.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Zm00001e014377_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	5	74

External Links

No external refs found!

Ore_g00644 (PUB12, AtPUB12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation