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  5. Ore_g03296

Ore_g03296


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g03296

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G40490 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g013860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g116756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19166 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g21475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18512.t1 Aspi01Gene18512 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008625 No alias not classified & original description: CDS=712-1971 0.02 OrthoFinder output from all 47 species
Azfi_s0149.g053226 No alias not classified & original description: CDS=547-1935 0.03 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.02 OrthoFinder output from all 47 species
Ceric.14G063200.1 Ceric.14G063200 not classified & original description: pacid=50633319... 0.02 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.03 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_29428 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_33012 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g37000.2 LOC_Os06g37000 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03896 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_93349g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g05437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17528 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05151 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g44185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo101375 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g04604 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002844_P001 Zm00001e002844 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e032753_P002 Zm00001e032753 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 115 178
IPR000504 RRM_dom 8 74
No external refs found!