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  5. Ore_g03871

Ore_g03871


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g03871

Target Alias Description ECC score Gene Family Method Actions
Adi_g020451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102739 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ala_g02347 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g14925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27273 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene27542.t1 Aspi01Gene27542 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63212.t1 Aspi01Gene63212 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Azfi_s0230.g059174 No alias not classified & original description: CDS=1-867 0.03 OrthoFinder output from all 47 species
Cba_g24805 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g01509 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g05540 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Ehy_g30061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025505001 ATCRT1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Lfl_g11310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26016 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_170709g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_9328282g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g04840 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g11253 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g12845 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g27550 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Pnu_g08615 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pnu_g08831 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pnu_g12284 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011589 No alias not classified & original description: CDS=1-987 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019777 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020256 No alias not classified & original description: CDS=1-1698 0.02 OrthoFinder output from all 47 species
Sam_g06799 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g24681 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g27709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g009170.3.1 Solyc04g009170 E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g12997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011788_P002 Zm00001e011788 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 223 265
IPR039525 RNF126-like_zinc-ribbon 7 39
No external refs found!