Ore_g03900 (RSH3, AT-RSH3, ATRSH3)

Aliases : RSH3, AT-RSH3, ATRSH3

Description : not classified & original description: none

Gene families : OG0006425 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006425_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g03900
Cluster	HCCA: Cluster_152

Target	Alias	Description	ECC score	Gene Family Method
Adi_g058991	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g14803	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g03228	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene53678.t1	RSH3, AT-RSH3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53681.t1	Aspi01Gene53681	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035826	RSH3, AT-RSH3, ATRSH3	not classified & original description: CDS=635-3163	0.03	OrthoFinder output from all 47 species
Dcu_g12674	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g25362	AT-RSH2, ATRSH2, RSH2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01024422001	RSH3, AT-RSH3, ATRSH3	Probable GTP diphosphokinase RSH3, chloroplastic...	0.02	OrthoFinder output from all 47 species
Gb_38498	RSH3, AT-RSH3, ATRSH3	Probable GTP diphosphokinase RSH3, chloroplastic...	0.03	OrthoFinder output from all 47 species
LOC_Os02g47120.1	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.04	OrthoFinder output from all 47 species
Len_g02422	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g06720	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020471	RSH3, AT-RSH3, ATRSH3	not classified & original description: CDS=1137-3722	0.02	OrthoFinder output from all 47 species
Sam_g16000	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e023299_P002	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	HCCA
BP	GO:0015977	carbon fixation	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007685	RelA_SpoT	440	558

External Links

No external refs found!

Ore_g03900 (RSH3, AT-RSH3, ATRSH3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation