Ore_g04060

Description : component *(bL19c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0002345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002345_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g04060
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00210720	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
AT4G17560	No alias	Ribosomal protein L19 family protein	0.02	OrthoFinder output from all 47 species
Adi_g002310	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g45795	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aob_g08190	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aop_g12532	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cre17.g734450	No alias	50S ribosomal protein L19, chloroplastic OS=Mesostigma viride	0.02	OrthoFinder output from all 47 species
Dcu_g09086	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g05444	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01002112001	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Gb_05695	No alias	component psRPL19 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Len_g08100	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g33279	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
MA_947876g0010	No alias	50S ribosomal protein L19-1, chloroplastic...	0.04	OrthoFinder output from all 47 species
Mp3g02740.1	No alias	component mtRPL19 of large ribosomal subunit proteome....	0.02	OrthoFinder output from all 47 species
Nbi_g00593	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g02445	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012817	No alias	not classified & original description: CDS=1-963	0.03	OrthoFinder output from all 47 species
Solyc08g078010.3.1	Solyc08g078010	component psRPL19 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e015296_P001	Zm00001e015296	component psRPL19 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
MF	GO:0042586	peptide deformylase activity	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001857	Ribosomal_L19	156	249

External Links

No external refs found!

Ore_g04060

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation