Ore_g10460 (ARF6)

Aliases : ARF6

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g10460
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00141830	HSS, ARF1-BP,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
AMTR_s00155p00082980	ARF16,...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
AT5G20730	TIR5, MSG1,...	Transcriptional factor B3 family protein /...	0.02	OrthoFinder output from all 47 species
AT5G62000	HSS, ARF1-BP, ARF2, ORE14	auxin response factor 2	0.02	OrthoFinder output from all 47 species
Adi_g088539	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33091	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g07961	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene24127.t1	ARF6, Aspi01Gene24127	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0129.g048848	ARF6	ARF-type transcription factor & original description: CDS=56-2815	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020904.93	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dde_g16727	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08602	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01008639001	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
LOC_Os01g70270.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
MA_85955g0010	ARF19, IAA22, ARF11	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Ore_g29226	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g27620	ARF4	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013444	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016361	ARF16	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Sam_g30394	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo117217	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Smo437944	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	892	983
IPR003340	B3_DNA-bd	126	227
IPR010525	ARF_dom	252	335

External Links

No external refs found!

Ore_g10460 (ARF6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation