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  5. Ore_g10943

Ore_g10943 (DRT111)


Aliases : DRT111

Description : pre-mRNA splicing factor *(SFPS/DRT111) & original description: none


Gene families : OG0007273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007273_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g10943

Target Alias Description ECC score Gene Family Method Actions
Aop_g10966 DRT111 pre-mRNA splicing factor *(SFPS/DRT111) & original... 0.02 OrthoFinder output from all 47 species
Cba_g01922 DRT111 pre-mRNA splicing factor *(SFPS/DRT111) & original... 0.02 OrthoFinder output from all 47 species
MA_9965663g0010 DRT111 pre-mRNA splicing factor (SPF45/RBM17) 0.02 OrthoFinder output from all 47 species
Mp2g10810.1 DRT111 pre-mRNA splicing factor (SPF45/RBM17) 0.02 OrthoFinder output from all 47 species
Msp_g06081 DRT111 pre-mRNA splicing factor *(SFPS/DRT111) & original... 0.02 OrthoFinder output from all 47 species
Pir_g00559 DRT111 pre-mRNA splicing factor *(SFPS/DRT111) & original... 0.02 OrthoFinder output from all 47 species
Sam_g07316 No alias pre-mRNA splicing factor *(SFPS/DRT111) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g069790.3.1 DRT111, Solyc02g069790 pre-mRNA splicing factor (SPF45/RBM17) 0.05 OrthoFinder output from all 47 species
Zm00001e036449_P002 DRT111, Zm00001e036449 pre-mRNA splicing factor (SPF45/RBM17) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR000467 G_patch_dom 248 287
IPR000504 RRM_dom 326 386
No external refs found!