Ore_g15136 (ATVPS54, VPS54)

Aliases : ATVPS54, VPS54

Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none

Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g15136

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00168660	ATVPS54, VPS54,...	Vesicle trafficking.target membrane tethering.GARP/EARP...	0.02	OrthoFinder output from all 47 species
AT4G19490	ATVPS54, VPS54	VPS54	0.03	OrthoFinder output from all 47 species
Adi_g063596	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Ala_g02680	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.07	OrthoFinder output from all 47 species
Als_g05127	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.07	OrthoFinder output from all 47 species
Aspi01Gene49548.t1	ATVPS54, VPS54,...	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Ceric.15G033300.1	ATVPS54, VPS54,...	GARP-specific component *(VPS54) of GARP/EARP...	0.06	OrthoFinder output from all 47 species
Cre02.g087551	ATVPS54, VPS54	Vesicle trafficking.target membrane tethering.GARP/EARP...	0.01	OrthoFinder output from all 47 species
Dcu_g12433	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.06	OrthoFinder output from all 47 species
GSVIVT01037972001	ATVPS54, VPS54	Vesicle trafficking.target membrane tethering.GARP/EARP...	0.02	OrthoFinder output from all 47 species
Gb_03763	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species
LOC_Os04g13470.1	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Lfl_g02410	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.06	OrthoFinder output from all 47 species
Mp5g09490.1	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Ppi_g03262	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Sam_g10508	No alias	GARP-specific component *(VPS54) of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Zm00001e008702_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.07	OrthoFinder output from all 47 species
Zm00001e040599_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004019	adenylosuccinate synthase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
CC	GO:0044599	AP-5 adaptor complex	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019515	VPS54_N	145	335
IPR012501	Vps54_C	818	949

External Links

No external refs found!

Ore_g15136 (ATVPS54, VPS54)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation