Ore_g18280 (NRPC2)

Aliases : NRPC2

Description : component *(NRPC2) of RNA polymerase III complex & original description: none

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g18280

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00020p00246930	NRPC2,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
AMTR_s00068p00181410	EMB1989, RPB2,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder output from all 47 species
AT3G23780	DRD2, NRPE2,...	nuclear RNA polymerase D2A	0.03	OrthoFinder output from all 47 species
Adi_g061129	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ala_g21244	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Als_g03892	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene15628.t1	EMB1989, RPB2,...	component *(NRPB2) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene30461.t2	DRD2, NRPE2,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0114.g046098	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Ceric.05G021300.1	EMB1989, RPB2,...	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ceric.30G032600.1	NRPC2, Ceric.30G032600	component *(NRPC2) of RNA polymerase III complex &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000158.16	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020554.10	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre02.g075150	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
Cre12.g542800	NRPC2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Dac_g02906	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g17296	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g24202	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01020543001	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
GSVIVT01035963001	DRD2, NRPE2,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
GSVIVT01036596001	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_30006	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
LOC_Os03g28960.1	NRPC2, LOC_Os03g28960	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os03g44484.1	EMB1989, RPB2,...	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.04	OrthoFinder output from all 47 species
LOC_Os04g54840.1	DRD2, NRPE2,...	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.03	OrthoFinder output from all 47 species
Len_g16317	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Lfl_g05018	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Lfl_g12805	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
MA_10429035g0010	EMB1989, RPB2, NRPB2	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.02	OrthoFinder output from all 47 species
MA_10429035g0020	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
MA_10429035g0030	EMB1989, RPB2, NRPB2	DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_10432131g0010	EMB1989, RPB2, NRPB2	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.02	OrthoFinder output from all 47 species
MA_776409g0010	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp5g21260.1	DRD2, NRPE2,...	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.02	OrthoFinder output from all 47 species
Nbi_g01478	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ore_g25703	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.06	OrthoFinder output from all 47 species
Sam_g26686	No alias	component *(NRPB2) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Smo148107	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.06	OrthoFinder output from all 47 species
Smo443461	NRPC2	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
Solyc10g078860.2.1	NRPC2, Solyc10g078860	subunit 2 of Pol III RNA polymerase	0.04	OrthoFinder output from all 47 species
Zm00001e012400_P001	EMB1989, RPB2,...	subunit 2 of Pol II RNA polymerase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007120	DNA-dir_RNAP_su2_dom	671	1054
IPR007642	RNA_pol_Rpb2_2	187	365
IPR007641	RNA_pol_Rpb2_7	1056	1146
IPR007644	RNA_pol_bsu_protrusion	32	410
IPR007645	RNA_pol_Rpb2_3	441	505
IPR007646	RNA_pol_Rpb2_4	542	602
IPR007647	RNA_pol_Rpb2_5	624	656

External Links

No external refs found!

Ore_g18280 (NRPC2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation